Perhaps your settings for the MENU. Go to appearance – menu, and look at the bottom. If you check the “Top Menu” and the “Header Menu” you get them both to appear. Select the one you want. Also, in Epik, in the Header Right area you can insert a “Custom Menu” or “Search” widget.
Menu Settings
Auto add pages
Automatically add new top-level pages to this menu
Theme locations
Top Menu
Header Menu
Sub-Header Menu
Footer Menu